YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|168774646, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSLNIKQGS DAHFPDYPLA SPSNNEIDLL NLISVLWRAK KTVMAVVFAF ACAGLLISFI  60
   61 LPQKWTSAAV VTPPEPVQWQ ELEKTFTKLR VLDLDIKIDR TEAFNLFIKK FQSVSLLEEY 120
  121 LRSSPYVMDQ LKEAKIDELD LHRAIVALSE KMKAVDDNAS KKKDEPSLYT SWTLSFTAPT 180
  181 SEEAQTVLSG YIDYISALVV KESIENVRNK LEIKTQFEKE KLAQDRIKMK NQLDANIQRL 240
  241 NYSLDIANAA GIKKPVYSNG QAVKDDPDFS ISLGADGIER KLEIEKAVTD VAELNGELRN 300
  301 RQYLVEQLTK ANINDVNFTP FKYQLSPSLP VKKDGPGKAI IVILSALIGG MVACGSVLLR 360
  361 YAMASRKQDA MMADHLV

Type	Start	End	Confidence
Cytoplasmic	1	41	0.92
Transmembrane Helix	42	61	0.91
Non-Cytoplasmic	62	338	0.95
Transmembrane Helix	339	362	0.88
Cytoplasmic	363	377	0.90