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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|162319120
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.56
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQKSRNGGV YPGTSGEKKL KVGFVGLDPG APDSTRDGAL LIAGSEAPKR GSVLSKPRTG  60
   61 GAGAGKPPKR NAFYRKLQNF LYNVLERPRG WAFIYHAYVF LLVFSCLVLS VFSTIKEYEK 120
  121 SSEGALYILE IVTIVVFGVE YFVRIWAAGC CCRYRGWRGR LKFARKPFCV IDIMVLIASI 180
  181 AVLAAGSQGN VFATSALRSL RFLQILRMIR MDRRGGTWKL LGSVVYAHSK ELVTAWYIGF 240
  241 LCLILASFLV YLAEKGENDH FDTYADALWW GLITLTTIGY GDKYPQTWNG RLLAATFTLI 300
  301 GVSFFALPAG ILGSGFALKV QEQHRQKHFE KRRNPAAGLI QSAWRFYATN LSRTDLHSTW 360
  361 QYYERTVTVP MYSSQTQTYG ASRLIPPLNQ LELLRNLKSK SGLTFRKEPQ PEPSPSKGRP 420
  421 CRGCLCGCCP GHSSQKVSLK DRVFSSPRGM AAKGKGSPQA QTVRRSPSAD QSLDDSPSKV 480
  481 PKSWSFGDRS RTRQAFRIKG AASRQNSEEA SLPGEDIVED NKSCNCEFVT EDLTPGLKVS 540
  541 IRAVCVMRFL VSKRKFKESL RPYDVMDVIE QYSAGHLDML SRIKSLQSRV DQIVGRGPTI 600
  601 TDKDRTKGPA ETELPEDPSM MGRLGKVEKQ VLSMEKKLDF LVSIYTQRMG IPPAETEAYF 660
  661 GAKEPEPAPP YHSPEDSRDH ADKHGCIIKI VRSTSSTGQR NYAAPPAIPP AQCPPSTSWQ 720
  721 QSHQRHGTSP VGDHGSLVRI PPPPAHERSL SAYGGGNRAS TEFLRLEGTP ACRPSEAALR 780
  781 DSDTSISIPS VDHEELERSF SGFSISQSKE NLDALGSCYA AVAPCAKVRP YIAEGESDTD 840
  841 SDLCTPCGPP PRSATGEGPF GDVAWAGPRK 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle