YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38230578
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.58
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPVGGVAGS SRSAACCAVL LAAVLFFSAP ATTEAYDSLD PNGNITIKWD IISWTPDGYV  60
   61 ATVTMFNYQQ FRHIPAPGWQ LGCSWAKKEV IWSMVGAQAT EQGDCSKFKS APPHCCKRDP 120
  121 TIVDLLPGTP FNQQIANCCK AGVIKTFNQD PGNAASSFQI SVGLAGTTNK AVKMPKNFTL 180
  181 RAPGPGYTCG RALVGRPTKY YSDGRRVTQA LMSWNVTCTY SQFLAQKTPT CCVSLSSFYN 240
  241 DTIVNCPTCS CGCQNNITRP GSCVNDNSPY LQSAINGPGK LTGQPLVQCT SHMCPIRIHW 300
  301 HVKLNYKDYW RVKVTITNFN YRMNYTDWNM VAQHPNFDNI TKLFSFNYKP LTPYGGRIND 360
  361 TAMFWGMKFY NDLLNQAGPL GNAQSELLMR KDSETFTFQK GWAFPRRVYF NGDNCVMPSP 420
  421 DDYPWLPSAS PLTKQPWTLP LLVFWTVLST LLAYYV

Type	Start	End	Confidence
Signal Peptide	1	35	0.96
N-region	1	26
H-region	27	32
C-region	33	35
Cleavage Site	35	36
Non-Cytoplasmic	36	436	0.99
Transmembrane Helix	437	455	0.57
Cytoplasmic	456	456	0.58