YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55742543
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASEEQCSAP PRWRSISLTH VEYPAGDLTG QVLAYMSLLP IAILVGFITL IVFKRELHTI  60
   61 SFFGGLIMNE GLNWLLKHIL QEPRPCGGHS SVTTEYGMPS SHSQFIWFFV VYFFLFLYLR 120
  121 MHQTNNARCV ELLWRHILSI MLLAVALSVS YSRVYLLYHT WSQVIYGGVA GLVMGVVWFF 180
  181 ITQEVLTPLF PKIAAWPISE FFLVRDTSLI PNILWFEYTV TRSEARNRQR KLGTKLQ

Type	Start	End	Confidence
Non-Cytoplasmic	1	31	0.73
Transmembrane Helix	32	53	0.92
Cytoplasmic	54	59	0.64
Transmembrane Helix	60	80	0.66
Non-Cytoplasmic	81	102	0.88
Transmembrane Helix	103	121	0.92
Cytoplasmic	122	131	0.89
Transmembrane Helix	132	154	0.89
Non-Cytoplasmic	155	162	0.71
Transmembrane Helix	163	182	0.94
Cytoplasmic	183	237	0.85