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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|55742489, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.67
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQFGKELVRR NSFYKCVINE DETEESADVF ELAFKGKASA IDRLIQKGPE HLSLRDENGA  60
   61 SLLHYASAGG NLDIIRLIVS IVGPEVLNVQ DEQGRTPLHW AVEQDQQQSC AVLLDLGADP 120
  121 NILNNALMGP LHLAVTKQYN HLAEVLLSCD KTNSNLEGDL GNTPVMLACS NNNCQALQIL 180
  181 IKRGAKMCIQ NKLGHYPIHT VAFAGAKEAM EMVLKIGEEL GVSSTLHINY LDKSKSTPLH 240
  241 LAVRGGNIEV IKLCILKGAK VEQHQSGKCT ALHFACSQGS LEAVKIMLSS YNRTEDIVNI 300
  301 RDGANRTPLH RATLFDHVEL AEYLISKPNT LSLDLICLGK GAEIDSIDCK GLSPLLLASS 360
  361 CSAWKTVAYL LSIGADFKIK EKTGRNFLHF VILQPKGLKN LPETVLQSTA VKEMLSDEDV 420
  421 EGCTPLHYAC KLGIHDSVKN MLGLNICLGQ KSREKKSALH FAAEYGRINT CHRLLETLTD 480
  481 SKMLNDWDEK GLTPLHLASR AGHAQVVDLL LRKGALFQSD YKGWTCLHHA AAEGYTQTMK 540
  541 ILLAANVKLL DEKNEDGNTA LHIAAQAGHV SAVLLLLDRG AEIALNDADN SFLHEAVRNE 600
  601 RREVVNATIE HERCDESMTS FKAKSRCVVL DIIEFLPESF QHLLDQCITE SDHDANSQDY 660
  661 HIMYNFQWLQ APIQLKKYAK TDKTKAFQPL AALNAMVRYN RLELLIHPLS RKYLEMKWTA 720
  721 YGSKVHFLNL AIYLLGLLPL TYLILNLRPS QDFSKGNGTS VIMVPVSFSE QQYLISVCII 780
  781 MVIVMNVYSI CKEVVQLAQQ RVNYFTDFSN PADWSAAISA LVFVVPMCCS VEATWQWEAG 840
  841 AYAILTSWIG FLLYFQRFER IGIYVVMFNG IVRTLVCIMV LFVFLLLAFG LAFYALMLHR 900
  901 PEFSSISLAL AQTFVMTVGE LNYQSTFLNS YEEGHMAFPA ITYFVFVFFV LLMPILLMNL 960
  961 MIGLAVGDIA EVQRNAELKR IAMQIDLHTA LEEKLPYWFL KRVDKPSTVV YPNKCKKVLL1020
 1021 EALVHGEIQN TVRTRLNLCS RKEGLLEREL HKQKNRLKEM SCMLEKQHNL LKLIIQKMEI1080
 1081 TSEADEYDGP QNHGALKQHT SSTSQKSKWV PLLQAIKAKK 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle