YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GP161_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNGSKNGTAV ANSTNGLDDN GLMVLESVSI IIIAILACLG NLVIVVTLYK KPYLLTPSNK  60
   61 FVFSLTSSNL LLSVLMLPFV VASSVRRDWM FGVVWCNFTA LLHLLVSSSS MLTLGAIAID 120
  121 RYYAVLYPMI YPMKITGNRA VLAIVYIWLH SLVGCLPPLF GWSSFEFDRF KWTCTVSWHK 180
  181 EISYTAFWVT WCCLLPLVAM LVCYGVIFRV ARIKARKVYC GSVVVSQEES SSQNNGRKNS 240
  241 NTSTSSSGSR KSLIYSGSQC KAFITILVVL GTFLTTWGPY VVVISTEALL GKNSVSPQVE 300
  301 TLVSWLSFTS AVCHPLIYGL WNKTVRKELL GMCFDDRYYR ESFVIRHRTS RLFSISNRIT 360
  361 DLGMSPHLTA MLVGGGQLLG RGSSTGDTGF SYTQDSATDV MLLESYTSEA SHSAHCTANK 420
  421 RRSSVTFEDQ VDHIPQGDPS VVQVTADIHK SLDSFASSLA KAIENDAKLQ LLGEWTQIPT 480
  481 SLFTVRNTQR VPRYLDGQRL RMESIDEGIV KDDDDDEEEM EREEKM

Type	Start	End	Confidence
Non-Cytoplasmic	1	27	0.92
Transmembrane Helix	28	49	0.91
Cytoplasmic	50	60	0.92
Transmembrane Helix	61	82	0.93
Non-Cytoplasmic	83	99	0.83
Transmembrane Helix	100	119	0.93
Cytoplasmic	120	139	0.81
Transmembrane Helix	140	162	0.88
Non-Cytoplasmic	163	186	0.93
Transmembrane Helix	187	208	0.97
Cytoplasmic	209	259	0.98
Transmembrane Helix	260	281	0.89
Non-Cytoplasmic	282	300	0.89
Transmembrane Helix	301	322	0.82
Cytoplasmic	323	526	0.73