YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55742394, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.59
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELYITTLVL TIILSAGAKV VHEDFAIRGC SDTEKEDTYG MDEEELWHAD FNQKKGVETL  60
   61 PDFGDPMTFP GFYEGSEGEM AVCKSNLALR IKGFKSPPPE MDAPQTSIYP KDDVELGVQN 120
  121 TLVCHVTGFY PPSVSVSWTK NNINVSEDIT LSQYRPRIDG TFNIFSTLKF TPAEGDIYSC 180
  181 MVKHRAIKDQ PQTKTWDVDA VLPSVGPAVF CGIGLTLGLL GVAVGTFFLV KGNNCN

Type	Start	End	Confidence
Signal Peptide	1	18	0.74
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	207	0.84
Transmembrane Helix	208	230	0.75
Cytoplasmic	231	236	0.62