YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29561776, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLLKLFLVI LMLSTFTETA DGYYNYGKQE CFYSSSDYSD MVLLISYSFN KVVDTQFNSS  60
   61 VGKFVGYTEQ GVKSAENFNK NQAYLQQLKA GVDTFCRHNA QISDSAVRDK AVLPEVTIKS 120
  121 VRQAEGKHPA VLLCSAYEFY PKKIKMSWLR DGKEVTSDVT STMEMADGDW YYQIHSHLEY 180
  181 TPKSGEKIQC LVEHASLTQP LTKDWNPHIS ESDRNKFAIG ASGLVLGIII AIAGLIYYKK 240
  241 KSTGRILVPN

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	216	0.99
Transmembrane Helix	217	238	0.95
Cytoplasmic	239	250	0.97