YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|26984452
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.80
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MELYVIVLTF IAFLSSNAEF VREEFEIYVC SDTESEAMVG ADGEELWHAD FKQKTGIITL  60
   61 PDFADRIGFP GFYEISVDSI AGCKRNLANN IRGFKSPPPA MDAPHSSVYP KDDVELGVQN 120
  121 SLICHATGFY PPSITISWKK NNNNVTESIN LSQYRPRADG SFNIFSTLKF TPAEGDIYSC 180
  181 TVNHEALQGQ AQTKTWDVDV ALPSAFPAVV CGVGVVFGLL GIAAGTFLLV KGNCN

Type	Start	End	Confidence
Signal Peptide	1	18	0.90
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	204	0.94
Transmembrane Helix	205	230	0.78
Cytoplasmic	231	235	0.78