YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|34538217, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSTESLQSF SSVWDNRSMW SNRSCPLEEE ALRLPLAVLY SLIFLFGLLG NLLALWVFLF  60
   61 LHRRRNSVRV FLINVALADL VLLACLPFRV LYHALGNVWT LGPRMCRVVG NLFYMNMYVS 120
  121 ITLLGLISLD RYLKIMGSHR GRRWLRGRSW SLVTCGLLWG LSVLMAVPMM ALAEGNEEPG 180
  181 KCYQYKQRKH ARGKAYFNLV MVAVFWLVFV VLLVSYGQIA RRLLRASQDK PHLPNAARYA 240
  241 RTARKSFVVP LLFTVCFVPY HAFRGFYVAS QLQDISCETR RLMDRTNEAV LLLSALNSCL 300
  301 DPVMYFLLSG SVRRATLQAL AQCLRLHAEP PATNSSTTEL RRTSVSHAST TAVLDTSRCS 360
  361 LGNITTLRSQ HTDLHPHSEP CVHRSGLSD

Type	Start	End	Confidence
Non-Cytoplasmic	1	36	0.99
Transmembrane Helix	37	60	0.90
Cytoplasmic	61	69	0.89
Transmembrane Helix	70	91	0.95
Non-Cytoplasmic	92	111	0.86
Transmembrane Helix	112	133	0.87
Cytoplasmic	134	149	0.91
Transmembrane Helix	150	170	0.93
Non-Cytoplasmic	171	198	0.90
Transmembrane Helix	199	220	0.88
Cytoplasmic	221	245	0.91
Transmembrane Helix	246	263	0.90
Non-Cytoplasmic	264	389	0.61