YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55742059
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKHQHFKG PEVSCCVKYF LFGFNIVFWL LGAAFLAIGL WAWAEKGVLS NISSITDLGG  60
   61 FDPVWLFIVT GAVMFVLGFA GCIGALRENT TLLKFFSVFL GLIFFLELTA GILAFVFKDW 120
  121 IKDQLNFFIN NNVKAYRDDI DLQNLIDFAQ EYWSCCGAHG PNDWNLNIYF NCTDSNPSRE 180
  181 RCGVPFSCCV KDPAEDVPNT QCGYDVRLKL ELEQQSYIYT KGCVGQFEKW LQDNLIVVAG 240
  241 VFVAIALLQI FGICLAQNLV SDIKAVKANW

Type	Start	End	Confidence
Cytoplasmic	1	20	0.93
Transmembrane Helix	21	43	0.95
Non-Cytoplasmic	44	63	0.94
Transmembrane Helix	64	86	0.93
Cytoplasmic	87	94	0.87
Transmembrane Helix	95	117	0.93
Non-Cytoplasmic	118	234	0.98
Transmembrane Helix	235	256	0.90
Cytoplasmic	257	270	0.82