YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27817279, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDRQCYYNE TIAFFYNRSQ KYLATEWNAV SKLVMGLGIT VCIFIMLANL LVMVAIYINR  60
   61 RFHFPIYYLM ANLAAADFFA GLAYFYLMFN TGPNTRRLTV STWLLRQGLI DTSLTASVAN 120
  121 LLAIAIERHI TVFRMQLHTR MSNRRVVVVI VIIWTMSIIM GAIPSVGWNC ICAIDTCSNM 180
  181 APLYSNSYLG FWAIFNLVTF VVMVVLYAHI FMYVRQRTMR MSRHSSGQRR NRDTMMSLLK 240
  241 TVVIVLGAFI VCWTPGLVIL LLDVVCANCN VLTYEKFFLL LAEFNSAMNP IIYSYRDKEM 300
  301 SITFKQILCC QRQENVNGTA EGSDRSASSI NHTVLSGAHH NDHSVV

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.91
Transmembrane Helix	34	57	0.91
Cytoplasmic	58	65	0.79
Transmembrane Helix	66	87	0.94
Non-Cytoplasmic	88	107	0.82
Transmembrane Helix	108	126	0.88
Cytoplasmic	127	145	0.87
Transmembrane Helix	146	166	0.92
Non-Cytoplasmic	167	188	0.91
Transmembrane Helix	189	213	0.91
Cytoplasmic	214	235	0.94
Transmembrane Helix	236	259	0.86
Non-Cytoplasmic	260	346	0.56