YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|27464512, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGDWSLLGNF LEEVQEHSTS VGKVWLTVLF IFRILVLGTA AESSWGDEQS DFMCDTLQPG  60
   61 CTNVCYDRAF PIAHIRYWVL QIVFVSTPSL IYMGHAMHTV RMEEKRKQKE QEEKAEAGKG 120
  121 EKEYLEHKEK FENTKTKIHL KGALLQTYVL SIVIRLVMEV TFIVIQYMMY GIFLDALYPC 180
  181 SMLPCPNPVN CYMSRPTEKN VFIVFMLVVA AVSLLLSVIE LYHLGWKQCK KCLRKHADKH 240
  241 ANDKIQNVKA VSAIEPIRTS IPMDLPENNQ PRLSQTCTPP PDFNQCLRSN QGPTSPPHLH 300
  301 SHHLHHIHQT CQPFTNHLAH QQNSVNMAAE RHHHSHDGLE PAVDFLQMHY GSPEARVRSE 360
  361 MTPSTPSTPS SHPGFFRDKR RLSKTSGTSS NRLRPSDLAV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.90
Non-Cytoplasmic	42	76	0.93
Transmembrane Helix	77	99	0.87
Cytoplasmic	100	146	0.96
Transmembrane Helix	147	169	0.81
Non-Cytoplasmic	170	201	0.88
Transmembrane Helix	202	225	0.93
Cytoplasmic	226	400	0.95