YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|190337112, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWSGLQSLL SGVNQYSTVF GRVWLSVVFV FRVLVFVVAA QRVWGDENLV CNTRQPGCAN  60
   61 VCTDTTFPIS HTHLWALQLI FVTCPSLMVI AHVKLREDKN KKYTDVHEGE HLYANPGKKR 120
  121 GGLWWTYLLS LLIKVIVDAG FLYILHYLYN GFDLPRLVKC SLDPCPNTVD CFISRPTEKK 180
  181 IFILFMVISS VVCIFMCICE MAYLIGKRVS SNFMMVKGPA QRSKTHDPTL SSRQNLISQK 240
  241 IKEKKIDNTA L

Type	Start	End	Confidence
Cytoplasmic	1	19	0.92
Transmembrane Helix	20	40	0.93
Non-Cytoplasmic	41	73	0.93
Transmembrane Helix	74	93	0.93
Cytoplasmic	94	122	0.96
Transmembrane Helix	123	145	0.90
Non-Cytoplasmic	146	181	0.94
Transmembrane Helix	182	205	0.94
Cytoplasmic	206	251	0.97