YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55250153, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.91
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAFDTNPFA DPVDVNPFQD PSVTQLTSAP QSGLAEFNPF SETNAATTVP VTQLPGPSQP  60
   61 AVLQPSVEPA QPSPQAVAAA AQAGLLRQQE ELDRKAAELE RKERELQNTA ANLHVRENNW 120
  121 PPLPSWCPVK PCFYQDFSTE IPADYQRICK MLYYLWMLHS VTLFLNLLAC LAWFTSDAAN 180
  181 GTAFGLSILW FLIFTPCAFL CWYRPIYKAF RSDNSFSFFV FFFVFFCQIG IYFIQLIGLP 240
  241 NLGTSGWLAA LSTVNKGPLA VTIIMMVVAG FFTLCAGLSL FLLQRVHAFY RRTGASFQQA 300
  301 QEEFSQGIFS SRTFRTAASS AARGTFQGN

Type	Start	End	Confidence
Cytoplasmic	1	154	0.99
Transmembrane Helix	155	175	0.96
Non-Cytoplasmic	176	182	0.84
Transmembrane Helix	183	203	0.94
Cytoplasmic	204	215	0.85
Transmembrane Helix	216	239	0.91
Non-Cytoplasmic	240	258	0.95
Transmembrane Helix	259	283	0.93
Cytoplasmic	284	329	0.99