YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SHSA5_RAT
Protein type:	Transmembrane
Type Confidence:	0.89
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGFGATVAIG LTVFVVFIAT IIVCFTCSCC CLYKMCCRPR PVVSNTTTTT VVHTAYPQPQ  60
   61 PVAPSYPGPT YQGYHPMPPQ PGMPAAPYPT QYPPPYLAQS TGPPAYHETL AGASQPPYNP 120
  121 AYMDPPKAVP

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.80
Transmembrane Helix	8	32	0.80
Cytoplasmic	33	130	0.86