YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55585501
Protein type:	Transmembrane
Type Confidence:	0.85
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVANTLVYHP ALAHWLRFVA TTVGRDKLLR TIQYFSRFYA WYLYRTNKPQ SAIDPYNAVK  60
   61 KQFGTTRKIM RIGKFLEHLK AAAVAFDNKS PVDPVLRYLA IGRQLGYAGY LTLDAVTVID 120
  121 VIGIRKLSSA KRLQDSAYRS WAAGLIFSTV AGIYTLVRLQ EKEKTIDRKE GEGVVEAKKI 180
  181 EKERSAARIQ LISDVCDLAA PLSAVGILNL DDGIVGITGT ISSLIGVWSQ WRKTAGPA

Type	Start	End	Confidence
Cytoplasmic	1	136	0.54
Transmembrane Helix	137	157	0.72
Non-Cytoplasmic	158	212	0.59
Transmembrane Helix	213	231	0.44
Cytoplasmic	232	238	0.54