YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29144199, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MERFDAVIIG AGAAGMFCAA QAGQAGSRVL LIDNGKKPGR KILMSGGGRC NFTNLYVEPA  60
   61 AYLSQNPHFC KSALARYTQW DFIDLVGRYG IAWHEKTLGQ LFCDDSAQRI VDMLVAECDK 120
  121 GGVTMRLRSE VLSVERDESG FVLALNGETV TTQKLVIASG GLSMPGLGAS PFGYKIAEQF 180
  181 GLKVLPTRAG LVPFTLHKPL LEQLQTLSGV SVPCVITARN GTVFRENLLF THRGLSGPAV 240
  241 LQISSYWQPG ELVSINLLPD LSLEDVLNEQ RNAHPNQSLK NTLAMHLPKR LVECLQQLGL 300
  301 IPDVSLRQLN VRDQQTLVDT LTAWQVQPNG TEGYRTAEVT LGGVDTNELS SRTMEARRVP 360
  361 GLYFIGEVMD VTGWLGGYNF QWAWSSAWAC AQDLIALKIN

Type	Start	End	Confidence
Signal Peptide	1	22	0.92
N-region	1	13
H-region	14	19
C-region	20	22
Cleavage Site	22	23
Non-Cytoplasmic	23	400	0.97