YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25513227, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQRDYVRRG QPAPSRRKKS TSRNSRKKQS NMPAVSPAMV AIAAAVLVTF IGGLYFITHH  60
   61 KKEESETLQN QKVTGNGLPP KPEERWRYIK ELESRQPGVR TPTEPSAGGE VMNPNQLTSE 120
  121 QRQLLEQMQA DMRQQPTQLN EVPWNEQTPE QRQQTLQRQR QAQQQQQQQQ QQWAQTQPVQ 180
  181 QPRTQPRVNE QPQTRTVQSA PAQPARQSQP PKQTASQQPY QDLLQTPAHT SAAAPKAAPI 240
  241 TRAPEAPKAT AEKKDERRWM VQCGSFKGAE QAESVRAQLA FEGFDSKITT NNGWNRVVIG 300
  301 PVKGKENADS TINRLKMAGH TNCIRLATGG

Type	Start	End	Confidence
Cytoplasmic	1	34	0.88
Transmembrane Helix	35	57	0.90
Non-Cytoplasmic	58	330	0.94