YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|198242971, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVEDTQPLI THLIELRKRL LNCIVAVLLI FLALIYFAND IYHLVAAPLI KQMPQGATMI  60
   61 ATDVASPFFT PIKLTFMVSL ILSAPVILYQ VWAFIAPALY KHERRLVVPL LVSSSLLFYI 120
  121 GMAFAYFVVF PLAFGFLTHT APEGVQVSTD IASYLSFVMA LFMAFGVAFE VPVAIVLLCW 180
  181 MGITTPEDLR KKRPYILVGA FIVGMLLTPP DVFSQTLLAI PMYCLFEIGV FCSRFYVGKR 240
  241 RTRDEDNEAE TEKAEHTED

Type	Start	End	Confidence
Cytoplasmic	1	19	0.98
Transmembrane Helix	20	38	0.96
Non-Cytoplasmic	39	73	0.91
Transmembrane Helix	74	96	0.89
Cytoplasmic	97	106	0.89
Transmembrane Helix	107	130	0.82
Non-Cytoplasmic	131	157	0.80
Transmembrane Helix	158	183	0.88
Cytoplasmic	184	193	0.89
Transmembrane Helix	194	210	0.95
Non-Cytoplasmic	211	216	0.70
Transmembrane Helix	217	237	0.88
Cytoplasmic	238	259	0.93