YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16421703, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRRDFIKAA SGGALLLGAA PSVSHAAAEN RPPIPGSLGM LYDSTLCVGC QACVTKCQDI  60
   61 NFPARNPEGE QTWSNNDKLS PYTNNIIQVW RSGTGVNKDQ EENGYAYIKK QCMHCVDPNC 120
  121 VSVCPVSALK KDPKTGIVHY DKDVCTGCRY CMVACPYNVP KYDYNNPFGA LHKCELCNQK 180
  181 GVERLDKGGL PGCVEVCPAG AVIFGTREEL MAEAKKRLAL KPGSEYHYPR QTLKTDDTYL 240
  241 HTVPKYYPHL YGEKEGGGTQ VLVLTGVPYE DLDLPKLDDL STGARSEHVQ HTLYKGMILP 300
  301 LAALAGLTVL VRRNSKNDHH DGGDDHES

Type	Start	End	Confidence
Signal Peptide	1	26	0.99
N-region	1	17
H-region	18	23
C-region	24	26
Cleavage Site	26	27
Non-Cytoplasmic	27	328	0.97