YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62129292, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	15	0.90
Transmembrane Helix	16	37	0.90
Non-Cytoplasmic	38	53	0.93
Transmembrane Helix	54	78	0.89
Cytoplasmic	79	89	0.82
Transmembrane Helix	90	110	0.91
Non-Cytoplasmic	111	129	0.88
Transmembrane Helix	130	150	0.91
Cytoplasmic	151	168	0.79
Transmembrane Helix	169	188	0.89
Non-Cytoplasmic	189	208	0.90
Transmembrane Helix	209	232	0.87
Cytoplasmic	233	245	0.90
Transmembrane Helix	246	267	0.90
Non-Cytoplasmic	268	284	0.84
Transmembrane Helix	285	305	0.90
Cytoplasmic	306	312	0.91
Transmembrane Helix	313	332	0.94
Non-Cytoplasmic	333	351	0.88
Transmembrane Helix	352	373	0.92
Cytoplasmic	374	392	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHDPKPLGG KIISKPVIIF GPLIVLCMLL IVKRLVFGLG SVSDLNGGFP WGVWIAFDLL  60
   61 IGTGFACGGW ALAWAVYVFN RGQYHPLVRP ALLASLFGYS LGGLSITIDV GRYWNLPYFY 120
  121 IPGHFNVNSV LFETAVCMTI YIGVMALEFA PALFERLGWK VSLKRLNKVM FFIIALGALL 180
  181 PTMHQSSMGS LMISAGYKVH PLWQSYEMLP LFSVLTAFIM GFSIVIFEGA LVQAGLKGNG 240
  241 PDEKNLFVKL TNTISVLLAI FVVLRFGELI YRDKLSYAFA GDFYSAMFWI EVVLMVFPLV 300
  301 VLRVAKLRND SRMLYLSALS ALLGCATWRL TYSLVAFNPG GGYHYFPTWE ELLISIGFVA 360
  361 IEICAYIVLI RLLPILPPLK QNDHNRHEAS KA