YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213646182
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVIGPFINAG AILFGGVIGA LLSQRLPERI RVSMTSIFGL CSLGIGILLV MKCANLPVMV  60
   61 LATLVGALIG EFCLLEKGIN GAVAKIQQLF MASGKKPTHD SFIQSYVAII VLFCASGTGI 120
  121 FGAMHEGMTG DPNILIAKSF LDFFTAIIFA CSLGIAVSAI CAPMLIIQLT LAACATLILP 180
  181 LTTPAMMGDF SAVGGLLLVA TGLRVCGIKM FPVVNMLPAL LLAMPISAAW AMFFA

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.84
Transmembrane Helix	6	23	0.92
Cytoplasmic	24	31	0.76
Transmembrane Helix	32	51	0.90
Non-Cytoplasmic	52	58	0.60
Transmembrane Helix	59	81	0.72
Cytoplasmic	82	101	0.74
Transmembrane Helix	102	124	0.92
Non-Cytoplasmic	125	139	0.64
Transmembrane Helix	140	162	0.82
Cytoplasmic	163	163	0.34
Transmembrane Helix	164	183	0.66
Non-Cytoplasmic	184	184	0.35
Transmembrane Helix	185	208	0.71
Cytoplasmic	209	212	0.50
Transmembrane Helix	213	234	0.90
Non-Cytoplasmic	235	235	0.59