YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|214000689
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQPVVRIGE WLVTPSVNQI SRQGRQITLE PRLIDLLMYF AHHPDEVLSR DNIIDHVWMR  60
   61 TIVTNHVVTQ SISELRKSLR DGGDSNAEYI VTVPKRGYKL TAPVIWCEEN SDEIDNLSTS 120
  121 PPPPIAATNA EPTEGVPAAA PVPPASLQTP TKKAKKPRIA AFWTWVMFLL SLATLVVFIV 180
  181 MSVVDHNAAV TKTRLLLNPR DIDVRFEGGN SCNNWVSQES YAIGLGGLIT DLLNTYSTFM 240
  241 VHDKTNYRVN EPSNSGKTLT IQFVNQRHYR AQQCFMSVVL IDNADGSTML DKRYFVTNTN 300
  301 QLSIQDDLFN SLSFVLTQPW PNRMREQLAL FRTPQNTALM RFYEARQLIL SGDAQALSKA 360
  361 GDILNGIIKE TPDFNYAYEY KVLVDVLRQS QQPFDKEQVA ALNEEFKKID QIPGVEKTSV 420
  421 YYKIKTVDLL GKGDIDAAYE EINKSIELEM SWFNYVLLGK VYEMKGENRL AADAYLTAFN 480
  481 LRPGENTLYW IENGVFQTSV QKIVPYLNSF LAED

Type	Start	End	Confidence
Cytoplasmic	1	160	0.98
Transmembrane Helix	161	184	0.90
Non-Cytoplasmic	185	514	0.89