YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lcl\|NC_016856.1_...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.68
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.90
Transmembrane Helix	7	26	0.89
Non-Cytoplasmic	27	32	0.66
Transmembrane Helix	33	51	0.92
Cytoplasmic	52	66	0.90
Transmembrane Helix	67	90	0.92
Non-Cytoplasmic	91	99	0.82
Transmembrane Helix	100	122	0.85
Cytoplasmic	123	128	0.60
Transmembrane Helix	129	154	0.78
Non-Cytoplasmic	155	166	0.77
Transmembrane Helix	167	186	0.89
Cytoplasmic	187	201	0.87
Transmembrane Helix	202	222	0.81
Non-Cytoplasmic	223	228	0.73
Transmembrane Helix	229	251	0.93
Cytoplasmic	252	278	0.77
Transmembrane Helix	279	300	0.81
Non-Cytoplasmic	301	332	0.68

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLFRILDPF TLTLITVVLL ASFFPAEGGF VPVVEGITTA AIALLFFMHG AKLSREAIIA  60
   61 GGSHWRLHLW VMCSTFVLFP VLGVLFAWWA PVNVDPMLYS GFLYLCILPA TVQSAIAFTS 120
  121 LAGGNVAAAV CSASASSLLG IFLSPLLVGL VMNIHGAQGS LEEVGKIMLQ LLLPFVLGHL 180
  181 SRPWIGNWVA RNKKWIAKTD QTSILLVVYS AFSEAVVNGI WHKVGWGSLL FIVVVSLILL 240
  241 AIVIAINVFV ARKCGFNKAD EITIVFCGSK KSLANGIPMA NILFPTSVLG MMVLPLMIFH 300
  301 QIQLMVCAGL ARRYKRQTEK LQAQQESRAA KA