YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|205328820, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHPISGAPAQ PPGEGRNPLS AASEQPLSMQ QRTVLERLIT RLISLTQQQS AEVWAGMKHD  60
   61 LGIKNDAPLL SRHFPAAEQN LTQRLGVAQQ NHANRQVLSQ LTELLGVGNN RQAVSDFIRQ 120
  121 QYGQTALSQL TPDQLKNVLT LLQQGQLSIP QPQQRPATDR PLLPAEHNTL NQLVTKLAAA 180
  181 TGESNKLIWQ SMLELSGVKS GELIPAKQFT HLATWLQARQ TLSLQHAPTL HTLQAALKQP 240
  241 LEPDELTAIK EYAQHTYQIQ PQTVLTTAQV QDLLNHIFLR RVEREADELE PLSIQPIYRP 300
  301 FAPMIETVKN LSARPGLLFI ALIIVLALFW LVS

Type	Start	End	Confidence
Cytoplasmic	1	310	0.65
Transmembrane Helix	311	332	0.90
Non-Cytoplasmic	333	333	0.66