YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213855851
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLILLGYLVV IGTVFGGYVM TGGHLGALYQ PAELVIIGGA GMGAFIVGNN GKAIKGTMKA  60
   61 IPLLFRRSKY TKSMYMDLLA LLYRLMAKSR QQGMFSLERD IENPKESEIF ASYPRILADA 120
  121 VMLDFIVDYL RLIISGNMNT FEIEALMDEE IETHESEAEV PANSLAMVGD SLPAFGIVAA 180
  181 VMGVVHALAS ADRPAAELGA LIAHAMVGTF LGILLAYGFI SPLATVLRQK SAETTKMMQC 240
  241 VKITLLSNLN GYAPPIAVEF GRKTLYSSER PSFIELEEHV RAVRNPNQQQ TTEEA

Type	Start	End	Confidence
Cytoplasmic	1	6	0.75
Transmembrane Helix	7	27	0.90
Non-Cytoplasmic	28	33	0.71
Transmembrane Helix	34	53	0.90
Cytoplasmic	54	170	0.82
Transmembrane Helix	171	190	0.91
Non-Cytoplasmic	191	199	0.70
Transmembrane Helix	200	221	0.91
Cytoplasmic	222	295	0.75