YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lcl\|NC_016856.1_...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSGWHEWPL MIFTVFGQCV AGGFIVLALA LMKGDLRAET QQRVIACMFG LWVLMGIGFI  60
   61 ASMLHLGSPM RAFNSLNRVG ASALSNEIAS GSVFFAVGGI GWLLAVLKKL PPALRTLWLI 120
  121 ITMVLGVVFV WMMVRVYNSI DTVPTWYSVW TPLGFFLTLF MGGPLLGYLL LRIAGVNGWA 180
  181 MRLLPAVSVL ALVVIAIMVA MQGAELATIH SSIQQASALV PDYGSLMAWR MVLLAAALCC 240
  241 WIVPQLKGYQ PAVPLLSVAF ILMLAGELIG RGVFYGLHMT VGMAVAS

Type	Start	End	Confidence
Non-Cytoplasmic	1	9	0.91
Transmembrane Helix	10	32	0.92
Cytoplasmic	33	43	0.93
Transmembrane Helix	44	67	0.89
Non-Cytoplasmic	68	87	0.86
Transmembrane Helix	88	106	0.97
Cytoplasmic	107	115	0.83
Transmembrane Helix	116	134	0.96
Non-Cytoplasmic	135	149	0.83
Transmembrane Helix	150	171	0.91
Cytoplasmic	172	182	0.74
Transmembrane Helix	183	204	0.89
Non-Cytoplasmic	205	225	0.90
Transmembrane Helix	226	244	0.95
Cytoplasmic	245	252	0.81
Transmembrane Helix	253	275	0.89
Non-Cytoplasmic	276	287	0.90