YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|29138178, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDYEVLRFI WWLLVGILLI GFAVTDGFDM GVGMLTRFLG RNDTERRIMI NSIAPHWDGN  60
   61 QVWLITAGGA LFAAWPMVYA AAFSGFYVAM ILVLASLFFR PVGFDYRSKI EDPRWRNMWD 120
  121 WGVFIGSFVP PLVIGVAFGN LLQGVPFHVD EYLRLYYTGN FFQLLNPFGL LAGIVSVGMI 180
  181 ITQGATYLQM RTVGELHLRA RATSQIAALV TLVCFALAGV WVMYGIDGYV VTSAIDHHAA 240
  241 SNPLTKEVAR EAGAWLVNFN NAPILWLVPA LGVVLPLLTI LTSRMEKGAW AFLFSSLTLA 300
  301 CIILTAGIAM FPFVMPSSTM MNASLTMWDA TSSQMTLNLM TWVAAVFVPI ILIYTSWCYW 360
  361 KMFGRITKEH IESNTHSLY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.61
Transmembrane Helix	9	30	0.88
Non-Cytoplasmic	31	77	0.62
Transmembrane Helix	78	99	0.89
Cytoplasmic	100	118	0.87
Transmembrane Helix	119	142	0.88
Non-Cytoplasmic	143	164	0.91
Transmembrane Helix	165	187	0.88
Cytoplasmic	188	205	0.83
Transmembrane Helix	206	225	0.93
Non-Cytoplasmic	226	261	0.97
Transmembrane Helix	262	282	0.93
Cytoplasmic	283	289	0.89
Transmembrane Helix	290	314	0.89
Non-Cytoplasmic	315	337	0.91
Transmembrane Helix	338	360	0.90
Cytoplasmic	361	379	0.98