YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	lcl\|NC_016856.1_...
Protein type:	Transmembrane
Type Confidence:	0.82
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.74
Transmembrane Helix	8	27	0.77
Non-Cytoplasmic	28	32	0.91
Transmembrane Helix	33	57	0.88
Cytoplasmic	58	66	0.82
Transmembrane Helix	67	88	0.91
Non-Cytoplasmic	89	119	0.93
Transmembrane Helix	120	141	0.91
Cytoplasmic	142	148	0.81
Transmembrane Helix	149	170	0.90
Non-Cytoplasmic	171	182	0.82
Transmembrane Helix	183	205	0.87
Cytoplasmic	206	217	0.85
Transmembrane Helix	218	237	0.90
Non-Cytoplasmic	238	247	0.76
Transmembrane Helix	248	269	0.95
Cytoplasmic	270	278	0.83
Transmembrane Helix	279	298	0.93
Non-Cytoplasmic	299	304	0.63
Transmembrane Helix	305	324	0.93
Cytoplasmic	325	335	0.87
Transmembrane Helix	336	359	0.89
Non-Cytoplasmic	360	375	0.86
Transmembrane Helix	376	396	0.89
Cytoplasmic	397	428	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIAMIKTTL ASLALLPGLT IAAPAVADKA DSAFMMICTA LVLFMTIPGI ALFYGGLIRA  60
   61 KNVLSMLTQV TVTFALVCIL WVVYGYSLAF GEGNHFFGNA DGAMLKNIAL TAVTGTIYQY 120
  121 IHVAFQGSFA CITVGLIVGA LAERIRFSAV LIFVVVWFTL SYIPIAHMVW GGGLLAAHGA 180
  181 LDFAGGTVVH INAAIAGLVG AYLIGKRVGF GKEAFKPHNL PMVFTGTAIL YIGWFGFNAG 240
  241 SAGSANEIAA LAFVNTVVAT AAAILGWIIG EWTLRGKPSL LGACSGAIAG LVGVTPACGY 300
  301 VGVGGALVIG VIAGLAGLWG VTMLKRLLRV DDPCDVFGVH GVCGIVGCIL TGVFAASSLG 360
  361 GVGFVDGVTM GHQVMVQLES IAITVVWSGV VAFVGYKLAD ILVGLRVPEE QEREGLDVNS 420
  421 HGENAYNA