YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|213051740
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.97
Transmembrane Helix	35	57	0.88
Non-Cytoplasmic	58	86	0.94
Transmembrane Helix	87	108	0.91
Cytoplasmic	109	115	0.90
Transmembrane Helix	116	136	0.94
Non-Cytoplasmic	137	143	0.74
Transmembrane Helix	144	162	0.97
Cytoplasmic	163	170	0.80
Transmembrane Helix	171	193	0.93
Non-Cytoplasmic	194	218	0.90
Transmembrane Helix	219	239	0.84
Cytoplasmic	240	245	0.82
Transmembrane Helix	246	268	0.81
Non-Cytoplasmic	269	270	0.52
Transmembrane Helix	271	290	0.87
Cytoplasmic	291	301	0.64
Transmembrane Helix	302	321	0.91
Non-Cytoplasmic	322	329	0.74
Transmembrane Helix	330	350	0.92
Cytoplasmic	351	370	0.95
Transmembrane Helix	371	392	0.95
Non-Cytoplasmic	393	418	0.89
Transmembrane Helix	419	439	0.91
Cytoplasmic	440	448	0.81
Transmembrane Helix	449	467	0.96
Non-Cytoplasmic	468	473	0.73
Transmembrane Helix	474	495	0.91
Cytoplasmic	496	504	0.79
Transmembrane Helix	505	526	0.91
Non-Cytoplasmic	527	546	0.88
Transmembrane Helix	547	571	0.76
Cytoplasmic	572	578	0.56
Transmembrane Helix	579	601	0.71
Non-Cytoplasmic	602	602	0.27
Transmembrane Helix	603	623	0.75
Cytoplasmic	624	630	0.66
Transmembrane Helix	631	652	0.86
Non-Cytoplasmic	653	659	0.62
Transmembrane Helix	660	679	0.94
Cytoplasmic	680	685	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRKREIPDG GAKNALTDLR FGRFVGRIRR SRHPALLLLA LLVAACWLTW VNFSVALPRS  60
   61 QWQQAIWSPD IDIIEQMIFH YSQLPRLAIS LLVGAGLGLV GVLFQQVLRN PLAEPTTLGV 120
  121 ATGAQLGITV TTLWAIPGAL TTQFAALTGA CIVGALVFGV AWGKRLSPVT LILAGLVVSL 180
  181 YCGAINQLLV IFHHDQLQSM FLWSTGTLTQ TDWSGVQRLW PQLLGGVMLT LLLLRPMTLM 240
  241 GLDDGVARNL GLALSLARLA ALSLAIVLSA LLVNAVGIIG FIGLFAPLLA KMLGARRLLA 300
  301 RLMLAPLIGA LILWLSDQII LWLTRVWMEV STGSVTALIG APLLLWLLPR LKSMSAPDMN 360
  361 ASDRVAAERR HVLTFAVAGG ALLLLATWVA LSFGRDAHGW TWASGTLLEE LMPWRWPRIL 420
  421 AALMAGVMLA VAGCIIQRLT GNPMASPEVL GISSGAAFGV VLMLFLVPGN AFGWLLPAGS 480
  481 LGAAATLLII MIAAGRGGFS PQRMLLAGMA LSTAFTMLLM MLQASGDPRM ADVLTWISGS 540
  541 TYNATGGQVT RTAIVMVILL AVVPLCRRWL TILPLGGDAA RAVGIALTPS RIALLALAAC 600
  601 LTATATMTIG PLSFVGLMAP HIARMLGFRR TMPHMVISAL AGGVLLVFAD WCGRMALFPY 660
  661 QIPAGLLSSF IGAPYFIYLL RKQSR