YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16759133
Protein type:	Transmembrane
Type Confidence:	0.50
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQYRTLGANG PRVSAIGLGC MGMSAFYGAH DDSTSIKTLH YALDQGVTLL DTADMYGPYT  60
   61 NERLVGRAIA DRRDRVFLAT KFGIVLDPAN PMARGVNGRP EYVRRSCEQS LQRLGVDHID 120
  121 LYYQHRVDPS VPIEETVGAM ADLVREGKVR YLGLSEASTQ TLERAHNVHP ITALQSEYSL 180
  181 WSREAEISAL STCERLGIGF VAYSPLGRGF LTGTIKTPED FAANDFRRTN PRFMGENFSR 240
  241 NLRLAEAIKQ MAREKECTPA QLALAWLLAR NRHLVPIPGT RHCARVDENL GALSLTLSPQ 300
  301 ELAAIEAVFP HDAAAGPRYW PEIMSTLNR

Type	Start	End	Confidence
Cytoplasmic	1	9	0.44
Transmembrane Helix	10	29	0.47
Non-Cytoplasmic	30	329	0.98