YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16501412, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.80
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.68
Transmembrane Helix	12	31	0.73
Non-Cytoplasmic	32	47	0.88
Transmembrane Helix	48	70	0.89
Cytoplasmic	71	85	0.87
Transmembrane Helix	86	105	0.94
Non-Cytoplasmic	106	113	0.75
Transmembrane Helix	114	135	0.92
Cytoplasmic	136	181	0.87
Transmembrane Helix	182	210	0.78
Non-Cytoplasmic	211	218	0.52
Transmembrane Helix	219	239	0.90
Cytoplasmic	240	257	0.58
Transmembrane Helix	258	274	0.60
Non-Cytoplasmic	275	306	0.86
Transmembrane Helix	307	327	0.91
Cytoplasmic	328	339	0.88
Transmembrane Helix	340	363	0.85
Non-Cytoplasmic	364	375	0.75
Transmembrane Helix	376	395	0.96
Cytoplasmic	396	414	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLSLPRLRM PRVPGFGLLA WLFAALKGWV MASRDKDADS LIMYDRTLLW LTFGLAAIGF  60
   61 VMVTSASMPV GQRLANDPFL FAKRDALYIF LAFCLAMVTL RLPMTFWQKY STTMLIASII 120
  121 MLLIVLVVGS SVNGASRWIA LGPLRIQPAE FTKLSLFCYL ANYLVRKVDE VRNNLRGFLK 180
  181 PMGVILVLAV LLLAQPDLGT VVVLFVTTLA MLFLAGAKLW QFIAIIGMGI SAVILLILAE 240
  241 PYRIRRVTSF WNPWEDPFGS GYQLTQSLMA FGRGEIWGQG LGNSVQKLEY LPEAHTDFIF 300
  301 AIIGEELGYI GVVLALLMVF FVAFRAMSIG RKALEIDHRF SGFLACSIGI WFSFQALVNV 360
  361 GAAAGMLPTK GLTLPLISYG GSSLLIMSTA IMFLLRIDYE TRLEKAQAFT RGSR