YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125553558
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.93
Transmembrane Helix	7	28	0.91
Cytoplasmic	29	102	0.93
Transmembrane Helix	103	123	0.89
Non-Cytoplasmic	124	154	0.95
Transmembrane Helix	155	174	0.94
Cytoplasmic	175	371	0.98
Transmembrane Helix	372	392	0.90
Non-Cytoplasmic	393	423	0.92
Transmembrane Helix	424	444	0.89
Cytoplasmic	445	463	0.88
Transmembrane Helix	464	483	0.95
Non-Cytoplasmic	484	508	0.84
Transmembrane Helix	509	529	0.75
Cytoplasmic	530	572	0.87
Transmembrane Helix	573	599	0.84
Non-Cytoplasmic	600	622	0.85
Transmembrane Helix	623	642	0.90
Cytoplasmic	643	766	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATVSDIGLS AAINVSMAVA FLLVFAFLRL QPINDRVYFP KWYLRGMRDS PVSSGAAVQK  60
   61 VVNLNMRSYL KFLSWMPAAL KMPEDELINH AGLDSAVYLR IYLTGIKIFV PISILASLVL 120
  121 FPVNWTNDTL DSMKVVHSKI DKLSISNIPY GSNRFVTHLV MAYAVTFWTC YVLFREYEII 180
  181 TTMRLRFLAS EKRRPDQFTV LVRNIPPDPD ESISELVEHF FLVNHPDHYL RHQVVYNANK 240
  241 LADLVEKKKK LQNWLDYYQL KYERNPSKRP TTKTGFLGCF GSEVDAIEYY KAEIEKIGKE 300
  301 EADERQKIMK DPQSAVPAAF VSFRSRWGAA VCAQTQQTSN PTVWITEWAP EPRDVYWNNL 360
  361 SIPFVSLTVR RLIVAVAFFF LNFFYVIPIA FVQSLASLEG IEKALPFLKP LIKIDVIKSF 420
  421 IQGFLPGIAL KVFLILLPTI LMFMSKFEGL ISQSSLERRS ASKYYIFLFF NVFLGSIVTG 480
  481 SALDQLKAYI HQSANEIPRT IGVAIPMRAT FFITYVMVDG WTGVAGEILR LRALIIFHLK 540
  541 NFFLVKTEKD REEAMDPGSI CFDWCEPRIQ LYFLLGLVYA VVTPLLLPFI LVFFGLAYVV 600
  601 YRHQIINVYN QQYESGAQFW PSVHGRIIIA LIVSQLLLIG LLSTKGFEET TPVLVVLPVL 660
  661 TFWFYKYCKN RFEPAFVRNP LQEAMRKDTL ERAREPTFDL KAYLANAYLH PVFKGREEED 720
  721 NMSISEDVGM EEVIVPTKRQ SRRNTPAQSK YEGSDTLSLP ETVHER