YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RWA3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.80
Transmembrane Helix	7	28	0.85
Cytoplasmic	29	136	0.71
Transmembrane Helix	137	155	0.87
Non-Cytoplasmic	156	200	0.48
Transmembrane Helix	201	223	0.81
Cytoplasmic	224	234	0.86
Transmembrane Helix	235	252	0.89
Non-Cytoplasmic	253	258	0.59
Transmembrane Helix	259	280	0.86
Cytoplasmic	281	287	0.84
Transmembrane Helix	288	312	0.82
Non-Cytoplasmic	313	339	0.94
Transmembrane Helix	340	359	0.86
Cytoplasmic	360	374	0.94
Transmembrane Helix	375	396	0.79
Non-Cytoplasmic	397	406	0.82
Transmembrane Helix	407	426	0.56
Cytoplasmic	427	434	0.61
Transmembrane Helix	435	455	0.68
Non-Cytoplasmic	456	474	0.82
Transmembrane Helix	475	495	0.87
Cytoplasmic	496	513	0.90
Transmembrane Helix	514	536	0.92
Non-Cytoplasmic	537	540	0.74

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSQPITPG QVSFLLGVIP VFIAWIYSEF LEYKRSSLHS KVHSDNNLVE LGEVKNKEDE  60
   61 GVVLLEGGLP RSVSTKFYNS PIKTNLIRFL TLEDSFLIEN RATLRAMAEF GAILFYFYIS 120
  121 DRTSLLGESK KNYNRDLFLF LYCLLIIVSA MTSLKKHNDK SPITGKSILY LNRHQTEEWK 180
  181 GWMQVLFLMY HYFAAAEIYN AIRVFIAAYV WMTGFGNFSY YYIRKDFSLA RFTQMMWRLN 240
  241 LFVAFSCIIL NNDYMLYYIC PMHTLFTLMV YGALGIFSRY NEIPSVMALK IASCFLVVIV 300
  301 MWEIPGVFEI FWSPLTFLLG YTDPAKPELP LLHEWHFRSG LDRYIWIIGM IYAYFHPTVE 360
  361 RWMEKLEECD AKRKMSIKTS IIAISSFVGY LWYEYIYKLD KVTYNKYHPY TSWIPITVYI 420
  421 CLRNSTQQLR NFSMTLFAWL GKITLETYIS QFHIWLRSNV PNGQPKWLLC IIPEYPMLNF 480
  481 MLVTAIYVLV SHRLFELTNT LKSVFIPTKD DKRLLHNVLA GAAISFCLYL TSLILLQIPH 540
  541