YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|38233109
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHSYDMFLWV AFPWLAIAAF AVGVSWRWRT DQFGWTTHSS QIYESTLLRL SSPLFHYGMM  60
   61 FVILGHVMGL AFPKSWTRAV GINDHAYHLI ATIPGTIAGI AAVIGLCGLI YRRVSNKAVL 120
  121 LSTSKSDKVM YILLALAIFS GFIATVSTQV FGGPHGYDYR ETISPWLRQL FIFNPTPELM 180
  181 LDVPWQFKVH VISGFTMLAV WPFTRLVHAF SAPVGYVNRP YVVYRSRDIT TQPSQQHVAW 240
  241 APVQHDKNQS KDEAGWTGA

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.94
Transmembrane Helix	7	28	0.92
Cytoplasmic	29	49	0.90
Transmembrane Helix	50	70	0.88
Non-Cytoplasmic	71	88	0.83
Transmembrane Helix	89	111	0.93
Cytoplasmic	112	128	0.96
Transmembrane Helix	129	151	0.90
Non-Cytoplasmic	152	186	0.95
Transmembrane Helix	187	209	0.78
Cytoplasmic	210	259	0.94