YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25309326
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.76
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MISLPATQTQ QRLKQNSVGK QNSTSPKCVK THGVGRASIQ MDLKTKMMIS IIVPCLNEEE  60
   61 VLPLFYQALE ALLPDLETEI EYVFVDDGSS DGTLELLKAY REQNPAVHYI SFSRNFGKEA 120
  121 ALYAGLQYAT GDLVVVMDAD LQDPPSMLFE MKNVLDKNVD LDCVGTRRTS REGEPFFRSF 180
  181 CAVLFYRLMQ KISPVALPSG VRDFRMMRRS VVDAILSLTE SNRFSKGLFA WVGFKTHYLD 240
  241 YPNVERQAGK TSWSFRQLFF YSIEGIVNFS DFPLTIAFVA GLLSCFLSLL MTFFVVVRTL 300
  301 ILGNPTSGWT SLMAVILFLG GIQLLTIGIL GKYISKIYLE TKKRPLYLIK EKSDLPDFTE 360
  361 KIK

Type	Start	End	Confidence
Cytoplasmic	1	273	0.76
Transmembrane Helix	274	297	0.87
Non-Cytoplasmic	298	308	0.63
Transmembrane Helix	309	334	0.83
Cytoplasmic	335	363	0.77