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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ZMPB_STRR6
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.32
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFKKDRFSIR KIKGVVGSVF LGSLLMAPSV VDAATYHYVN KEIISQEAKD LIQTGKPDRN  60
   61 EVVYGLVYQK DQLPQTGTEA SVLTAFGLLT VGSLLLIYKR KKIASVFLVG TMGLVVLPSA 120
  121 GAVDPVATLA LASREGVVEM EGYRYVGYLS GDILKTLGLD TVLEETSAKP GEVTVVEVET 180
  181 PQSTTNQEQA RTENQVVETE EAPKEEAPKT EESPKEEPKS EVKPTDDTLP KVEEGKEDSA 240
  241 EPAPVEEVGG EVESKPEEKV AVKPESQPSD KPAEESKVEQ AGEPVAPRKD EQAPVEPENQ 300
  301 PEAPEEEKAV EETPKQEEST PDTKAEETVE PKEETKTAKG TQEEGKEGQA PVQEVNPEYK 360
  361 VTTGTVEKST ESELDFTTEV VPDDTKYVDE EVVERQGSKG VQVTKTTYET VEVVETDKVL 420
  421 STTTEVKTPV VPKVVKKGTK PVETREEVIP FATKEQEDDT LKRGTRQVAQ EGVNGKKQIT 480
  481 ETYKTIRGEK TNEAPTVEET VLQAPQDEII KKGTKGLEKP TLQWANTEKD VLKKSATASY 540
  541 TLTKPAGVEI KSIKLALKDK DGQLVKEVTV AENNLNATLD KLKYYQGYTL STTMVYDRGE 600
  601 GEETEKLEDK QIQLDLKKVE IKNIKETSLM NVDAEGNETD KSLLSEKPTD VSQLYLRVTT 660
  661 HDNKVTRLAV SSVEEVVVDG KTLYKVVAKA PDLVQRRADD TLSEEYVHYF EKQLPKVNNV 720
  721 YYNFNELVKD MQANPMGEFK LGADLNAVNV KPAGKAYVMA KFRGTLSSVE NHQYTIHNLE 780
  781 RPLFNEAEGA TLKNFNLGNV NINMPWADKV APIGNMFKKS TLENIKVVGS VTGNNDVTGA 840
  841 VNKLDEANMR NVAFIGKINS LGDKGWWSGG LVSESWRSNT DSVYFDGDIV GNNSKFGGLV 900
  901 AKVNHGSNQW DVKQKGRLTN SVVKGTMTLK NHGQSGGLVH ENYDWGWVEN NISMMKVNNG 960
  961 EIMYGSGSID GDPYFGFDYF KNNYYVKDVA TGESTYKRSK QIQSISQAEA DAKIANMGIT1020
 1021 ANTFAIQDPV VNKLNRIIDR DSEYKAIQDY QETRNLAYRN LEKLQPFYNK EWIVNQGNKL1080
 1081 TDESNLVKKT VLSVTGMKSG QFVTDLSSVD KIMIHYADGT KEEFGVSAIS DSRVKQVKEY1140
 1141 NVDDLGVVYT PNMVDKNRDS LITKVKEKLS SVALDSAEVK SITNNPASLY LEESFAEVRE1200
 1201 TLDKLVKSLL ENEDHQLNSD EVAEKALLKK VEDNKAKIIL ALTYLNRYYG IDYDGLNFKH1260
 1261 LMMFKPDFYG KTPSILDFLI RIGSAEKNLK GDRSLEAYRE VIGGTIGKGE LNGLLGYNMR1320
 1321 LFTKYTDLND WFIHAAKNVY VSEPETTTED FKDKRHRIYD GLNNDVHGRM ILPLLNLKKA1380
 1381 HIFVISTYNT IAFSSFEKYG KNTEEERNAY KAEIDRVAKA QQRYLDFWSR LALPKVRNQL1440
 1441 LKSQNSVPTP VWDNQVYVGL GGANRMGYGD GGRVVTPVRE LFGPTDRWHQ INWNMGAMAK1500
 1501 IYERPWKDDQ VYFMVTNMME PFGISAFTHE TTHVNDRMAY YGGDWHREGT DLEAFAQGML1560
 1561 QTPDKSTTNG EYGALGINMA YERKNDGEQL YNYDPEKLDS REKIDSYMKN YNESMMMLDY1620
 1621 LEASAVIRQN LSDNSKWFKK MDKEWRTNAD RNRLIGEPHQ WDKLRDLTEE EKKLPIDSID1680
 1681 KLVENNFVTL HGMPKNGRYR TEGFDSSYQP VNMMAGVFGG NTSKSTVGSI SFKHNAFRMW1740
 1741 GYYGYENGFI PYVSNKLKGA ANKENKGLLG DDFIIKKVSK NQFQNLEEWK KHWYHEVYDK1800
 1801 AQKGFVEIEV DGVKISTYAQ LQSLFEEAVS KDLAGMDDKN IKNHYQYTEN LKWKIYKQLL1860
 1861 KNTDGFSSDL FTAPQA

YRC Informatics Platform - Version 3.0
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