YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25508388
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNDKLKIFLL LGVFFLAITG FYVLLIRNAG QTDASQIEKA AVSQGGKAVK KTEISKDADL  60
   61 HEIYLAGGCF WGVEEYFSRV PGVTDAVSGY ANGRGETTKY ELINQTGHAE TVHVTYDAKQ 120
  121 ISLKEILLHY FRIINPTSKN KQGNDVGTQY RTGVYYTDDK DLEVINQVFD EVAKKYDQPL 180
  181 AVEKENLKNF VVAEDYHQDY LKKNPNGYCH INVNQAAYPV IDASKYPKPS DEELKKTLSP 240
  241 EEYAVTQENQ TERAFSNRYW DKFESGIYVD IATGEPLFSS KDKFESGCGW PSFTQPISPD 300
  301 VVTYKEDKSY NMTRMEVRSR VGDSHLGHVF TDGPQDKGGL RYCINSLSIR FIPKDQMEEK 360
  361 GYAYLLDYVD

Type	Start	End	Confidence
Cytoplasmic	1	6	0.73
Transmembrane Helix	7	26	0.75
Non-Cytoplasmic	27	370	0.97