YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STEA3_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGEMDKPLI SRRLVDSDGS LAEVPKEAPK VGILGSGDFA RSLATRLVGS GFSVVVGSRN  60
   61 PKRTAGLFPS LAQVTFQEEA VSSPEVIFVA VFREHYSSLC SLADQLAGKI LVDVSNPTEK 120
  121 ERLQHRQSNA EYLASLFPAC TVVKAFNVIS AWALQAGPRD GNRQVLICGD QLEAKHTVSE 180
  181 MARAMGFTPL DMGSLASARE VEAIPLRLLP SWKVPTLLAL GLFVCFYAYN FIRDVLQPYI 240
  241 RKDENKFYKM PLSVVNTTLP CVAYVLLSLV YLPGVLAAAL QLRRGTKYQR FPDWLDHWLQ 300
  301 HRKQIGLLSF FFAMLHALYS FCLPLRRSHR YDLVNLAVKQ VLANKSRLWV EEEVWRMEIY 360
  361 LSLGVLALGM LSLLAVTSIP SIANSLNWKE FSFVQSTLGF VALMLSTMHT LTYGWTRAFE 420
  421 ENHYKFYLPP TFTLTLLLPC VIILAKGLFL LPCLSHRLTK IRRGWERDGA VKFMLPAGHT 480
  481 QGEKTSHV

Type	Start	End	Confidence
Cytoplasmic	1	211	0.78
Transmembrane Helix	212	231	0.89
Non-Cytoplasmic	232	259	0.78
Transmembrane Helix	260	282	0.86
Cytoplasmic	283	303	0.77
Transmembrane Helix	304	323	0.91
Non-Cytoplasmic	324	358	0.79
Transmembrane Helix	359	382	0.87
Cytoplasmic	383	390	0.74
Transmembrane Helix	391	413	0.87
Non-Cytoplasmic	414	431	0.76
Transmembrane Helix	432	454	0.89
Cytoplasmic	455	488	0.84