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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|25401636
Protein type: Transmembrane
Type Confidence: 0.70
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADIMVDSVT TGIDLNETKA VEAINRLKSA VKDSTREWQI NEAQAKSAGD AVSASKYRYE  60
   61 GLSEAMEKQK AYIANLSEGM KTINRNTDAG EKAYQKYNAQ LTTAERSLAS MTGQLNRAKS 120
  121 AYEYQQTGIE DLNKSLSAND KLMQSQIDLY EKTRNKMGAA KAEVSGLSTS YAKQTEIYRA 180
  181 QVTELKRLEA AEGTSSETLV KQKTRVNEAA SSLMNYRNKL LEANLAVTKM QPFNSESLIG 240
  241 KGLNTVYQTT EKATDVMAAG YQKVKSAAYQ SAFGIAAIGA AAVKGAQMAS ELQNQYKTTF 300
  301 NLLVTGGEQA KEAQENVNKM QEQGSELSVK YGKTQKEIAD GYQELIKRGY TSSQALAALP 360
  361 TMLQASVASG DDFTDVVHNS TAALESFGMR SNDVAGMTKN TKEAVNQMAY AADMTATDFQ 420
  421 NMGVAMEYVG ASAHQSKLSL SETASAIGIL SNNGLEADKA GTGLRKVIVS LQSPSKDAAE 480
  481 ALSGIGLSTK DFVDQNGNMK SMTEIFGLLN QHTEKLSSFQ KGQIFHALFG TTGQQAGAIL 540
  541 SENVKQLGEL DDKVKKSADG QGYVVNLANK NMQSTQNELK QFKAAGEAVL IMIGQRFLPV 600
  601 LSDAATSMAK AFNSKEGKQG LEEIAKWIAE IFQKLVDTVK FIGTHKDEVV TFGKIFAGIW 660
  661 ATKKIGDVIV WLKKLKKSLL EIQAIDALSG GLGTGGIKAS VGKGVATEAG TVASTVTKGG 720
  721 VAAEGEALVA SGSLSKATSL IPRLLGIIGS VGGSTVLSGG INAGAELLSK DSTAQKTGGV 780
  781 AGSLGGAAAG AAIGSLIAPG IGTAIGAAIG GMGGKNLGKK LGDLINNGLK ESSLKSEKLP 840
  841 VVKFDPKAPT KDMKEFSKDY QGFLDKINKA SNVDIVDEKS LEKAKKATAD AYAQMSKDID 900
  901 KFYQNQEKDS KKQIDILVKN GVITQAQADK MYKGQKDSDD KQKVAQKKNL DEMKKNTDKY 960
  961 YSDVAKSQKS YDTQSQKDAS NHANLMKKIK SGNTSELLKI EKTYGKNSPE YQQEMNKEIA1020
 1021 KENSDFNKAQ QAAKKKHNEA MNKLEKDYAK TQTKAEEQMN NQINTATKIA QNKQLDLLDD1080
 1081 LKNKKGKLNQ KQLIDTLEKA DDEYKGVKDK AQKQKDEAVK AANEKYKKTV AAADKERAEN1140
 1141 GSMSKAQYDE IVKNAQKQRD DTISAAKKQQ TEVTDKAQKT HDKTVELANS KADKNVKAAA1200
 1201 KEQGETVEQY TKGFKDSRNL INSFIDGING VLNFLHKGWG NIGHVSLKGF ATGTRGLAQD1260
 1261 ETALVGEEGF ELAHHPSRGI FAVGQQGPEI RNLKAGTSIL PHSMSKEFLS LTANLPAHAD1320
 1321 GVSGFLSDAL GWVKSTYKDV TSVISKGPKG VVDAIYNGLG LDDLENDFPP VVTRIAKGSA1380
 1381 QTAQDNFIKF LQSFFKKAES DAGGSQGSPS GSGVQRWAGQ VKQALAANGL STSQDMIDRV1440
 1441 LRQISSESSG NEKAVQGNIG DINNITGDLA KGLMQTISST FNANKFPGHG DIFNGYDNLL1500
 1501 AALNYAKKTY GPSLSFLGNG HGYENGGIIN AHGFYEIAEG NRPEMVIPLD PQKKSRATQL1560
 1561 LNQASQTINN NQGYSNNVTD FSPVLALLSN IFNSIEDVKK NPLIAYALLD GRNVSQGLAP1620
 1621 YMNQALTDYV NQQDRLWGKN 

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