YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	S35A4_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.77
Transmembrane Helix	19	39	0.91
Non-Cytoplasmic	40	53	0.66
Transmembrane Helix	54	76	0.80
Cytoplasmic	77	85	0.63
Transmembrane Helix	86	106	0.68
Non-Cytoplasmic	107	114	0.55
Transmembrane Helix	115	134	0.61
Cytoplasmic	135	142	0.80
Transmembrane Helix	143	161	0.94
Non-Cytoplasmic	162	181	0.92
Transmembrane Helix	182	205	0.87
Cytoplasmic	206	216	0.87
Transmembrane Helix	217	239	0.87
Non-Cytoplasmic	240	247	0.81
Transmembrane Helix	248	270	0.87
Cytoplasmic	271	276	0.89
Transmembrane Helix	277	298	0.90
Non-Cytoplasmic	299	303	0.73
Transmembrane Helix	304	323	0.93
Cytoplasmic	324	324	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVEDGGMPG LARPKQARWT LMLFLSTAMY GAHAPFLALC HVDGRVPFRP SSAVLLTELT  60
   61 KLLLCAFSLL VGWQTWPQGT PPWRQAAPFA LSALLYGANN NLVIYLQRYM DPSTYQVLSN 120
  121 LKIGSTALLY CLCLGHRLSA RQGLALLLLM AAGACYASGG FQEPGNTLPG PRSAAGARPM 180
  181 PLHITPLGLL LLILYCLISG LSSVYTELIM KRQRLPLALQ NLFLYTFGVI LNLGLYAGSG 240
  241 PGPGFLEGFS GWAVLVVLNQ AVNGLLMSAV MKHGSSITRL FIVSCSLVVN AVLSAVLLQL 300
  301 QLTATFFLAA LLIGLAVCLY YGSP