YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15616629
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.97
Transmembrane Helix	12	34	0.87
Non-Cytoplasmic	35	50	0.92
Transmembrane Helix	51	73	0.92
Cytoplasmic	74	82	0.83
Transmembrane Helix	83	101	0.97
Non-Cytoplasmic	102	108	0.74
Transmembrane Helix	109	127	0.92
Cytoplasmic	128	147	0.82
Transmembrane Helix	148	169	0.94
Non-Cytoplasmic	170	180	0.73
Transmembrane Helix	181	201	0.81
Cytoplasmic	202	236	0.93
Transmembrane Helix	237	257	0.91
Non-Cytoplasmic	258	271	0.75
Transmembrane Helix	272	293	0.92
Cytoplasmic	294	301	0.87
Transmembrane Helix	302	320	0.97
Non-Cytoplasmic	321	326	0.83
Transmembrane Helix	327	348	0.90
Cytoplasmic	349	359	0.93
Transmembrane Helix	360	382	0.89
Non-Cytoplasmic	383	389	0.72
Transmembrane Helix	390	410	0.94
Cytoplasmic	411	427	0.91

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKYNKAEKS WMIYDWADSA YFLIIVTAIF PIYYKEVATN GGVAPADSTA YLGYTISIAT  60
   61 FLLALLGPIL GTVADYRGMK GKFFGSFFSI GVLSTIGLFF VPDNHWLLLL LVYTLTSLGA 120
  121 RGANVFYDAY IVDVTTKQRM DELSARGYAL GYVGSSIPFI ICIALIILAQ TGTIRLTVSE 180
  181 ASRSAFLITA GWWLVFTIPM LKNVKQQYGV EREPKMVVSS FKRLGQTFKE IRQYRTVFLF 240
  241 LIAYFFYIDG VGTIISMSTA YGTDLGLSAT DLILALLAVQ IVAAPFSILY GTLANRFGVK 300
  301 KMLYTGIVIY MIVCVYAMFL RTSVDFWIMA MLVATSQGGI QALSRSYFAQ MVPKEKSNEF 360
  361 FGFYTIFGRF AAVSGPFLVG VITQITGSSA FGVSSLIVLF AIGLIVLTFV PDAGKEDAVE 420
  421 PRVKLMQ