YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25290561
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHDMPIWTIG GLTFNMSTVL MTTVTCVIVF LICFIGTRRL SMRPSGLQNF LEWVVDFVRG  60
   61 IVKANMDWKT GGRFTALAFT LLFFVFVANM LGIPFEIYHK ETHEVWWKSP TSDPALTLSL 120
  121 AAFVIILTHI YGIRMKGFGE YARDYFRPVP FLFPFKIIEE FANTLTLGMR LFGNVFAKEI 180
  181 LMVLLVGLAT SGVVWGVLAF IPTMIWQAFG IFIGTLQAYI FAMLAMVYMA HKVESHH

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.90
Transmembrane Helix	14	36	0.89
Cytoplasmic	37	73	0.92
Transmembrane Helix	74	93	0.94
Non-Cytoplasmic	94	113	0.87
Transmembrane Helix	114	133	0.95
Cytoplasmic	134	179	0.93
Transmembrane Helix	180	201	0.92
Non-Cytoplasmic	202	207	0.73
Transmembrane Helix	208	230	0.91
Cytoplasmic	231	237	0.91