YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25321274
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWTYVLHRVM LLIPVLIGMT IITFSIVHLI PGNPAQTILG EQASPQAVAE LEERLGLNEP  60
   61 YLVQYGYYVR DLLTGDFGTS LRTRAPISEE IVPYLGATLE LTFFAMLFAV VVGVNAGIIS 120
  121 AWKQHSFFDY ACMLVALLGV SMPIFWLALM QQWIFAQELG WFPAFGRDNP RDPIQSITGL 180
  181 YVLDAILHWR WDHVHVALKH LVLPAIALGT IPMAIIARMT RSSMLEVLRS DYIRTVHAKG 240
  241 SSQFVVIYKH ALKNAMIPVL TVAGLQTGVL LGGAILTETI FSWPGIGRYI YEAITYRDYP 300
  301 VIQSGILVVA IMFVVINLIV DLLYSYIDPR IKY

Type	Start	End	Confidence
Cytoplasmic	1	8	0.94
Transmembrane Helix	9	30	0.94
Non-Cytoplasmic	31	100	0.96
Transmembrane Helix	101	122	0.89
Cytoplasmic	123	129	0.81
Transmembrane Helix	130	150	0.92
Non-Cytoplasmic	151	195	0.94
Transmembrane Helix	196	217	0.91
Cytoplasmic	218	256	0.94
Transmembrane Helix	257	277	0.91
Non-Cytoplasmic	278	301	0.85
Transmembrane Helix	302	324	0.89
Cytoplasmic	325	333	0.85