YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25287875
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	116	0.98
Transmembrane Helix	117	138	0.85
Non-Cytoplasmic	139	150	0.88
Transmembrane Helix	151	173	0.91
Cytoplasmic	174	178	0.89
Transmembrane Helix	179	198	0.90
Non-Cytoplasmic	199	207	0.76
Transmembrane Helix	208	228	0.89
Cytoplasmic	229	241	0.79
Transmembrane Helix	242	261	0.91
Non-Cytoplasmic	262	281	0.69
Transmembrane Helix	282	303	0.87
Cytoplasmic	304	319	0.68
Transmembrane Helix	320	343	0.84
Non-Cytoplasmic	344	355	0.73
Transmembrane Helix	356	375	0.75
Cytoplasmic	376	380	0.45
Transmembrane Helix	381	413	0.72
Non-Cytoplasmic	414	420	0.59
Transmembrane Helix	421	444	0.90
Cytoplasmic	445	453	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKEERLAKE ILEHVGGAEN IKRLAHCMTR IRLDLHEDKL VDIAQLKNID GVMGVVEDDT  60
   61 LQIVVGPGTV NRVAAKMCEQ TGLSLNEVDD PDHVAEDTKQ AIKKKNNTPI KNFLKRIGSI 120
  121 FIPLIPALVA SGLINGGANF AQNAGVSPDT TWLQILLVIG SGIFTFLAIL VGWNTAKEFG 180
  181 GTPALGAIAG ILIINPALEN VTLFGEQLVP GRGGIFAVLL AGWLMAVVEK QIRKGVPSAV 240
  241 DIILTPFLTV LIVGVSTIVV LQPVGGWIAE GVTAGINGVL DIGGAVAGAI LAGTFLPLVM 300
  301 VGMHHGLTPI HLEFINSQGV TPLLTILAMA GAGQVGAAIA VFVKTKNQRL KNTVKGALPV 360
  361 GFLGIGEPLL YGVTLPLGRP FITACCGAAV GGAFQAVMST AAVGIGVSGL SLIPLIAENK 420
  421 YFIYFLGLVV SYTFGFLFTY LFGYKEEMAE NIG