YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25319447
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELLMKLSI ALFFGLLIGI DRQLKHKPLG LKTSMVICVA SCLVTIVSVE SFHRFATPMF  60
   61 NNMDPMRLAA QIVSGVGFLG AGVILRKRND VISGLTTAAM IWAASGLGIA VGAGFYIEAG 120
  121 YMVVLLMLAI NVFPQLVKKV GPSSLRQRDV AVKMVMEPNM RMTELIQSIE RKTSMAKKGS 180
  181 DIRIRHLKLK DLENGNQQVE LILSAPEKQY TTEIYYLIKK IDHVLTVDVE HL

Type	Start	End	Confidence
Non-Cytoplasmic	1	4	0.52
Transmembrane Helix	5	20	0.55
Cytoplasmic	21	28	0.80
Transmembrane Helix	29	52	0.83
Non-Cytoplasmic	53	66	0.84
Transmembrane Helix	67	85	0.95
Cytoplasmic	86	91	0.87
Transmembrane Helix	92	113	0.88
Non-Cytoplasmic	114	118	0.65
Transmembrane Helix	119	137	0.88
Cytoplasmic	138	232	0.91