YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25296278
Protein type:	Globular with Signal Peptide
Type Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSVIQKSQA YFKGITILTM IFALTACSTD STSNQNEQGS SDTKAQPIEL LNVSYDPTRE  60
   61 LYQDFNRSFI EYWQEETGET VTIQQSHGGS GSQARSIIDG LEADVATLAL AYDLDMLHET 120
  121 RNLIPENWQE RLPYNSTPYT STIVFLVRQG NPLDIQDWDD LVQEGVSVIT PNPKTSGGAR 180
  181 WNYLAAWGYA LQEYGSEEAA KEFVTKLYQN VAVLDSGARG ATTTFVERGI GDVFLSWENE 240
  241 AFLALHELGE DQFDIVFPSV SILAEPPVTV IDANVDKKGT REVAEAYLEY LYTDIGQELA 300
  301 AEHYYRPREE DILAKYSEVF PEIQLFTIDE VYGSWSEAQK THFDDGGVFD QIYQP

Type	Start	End	Confidence
Signal Peptide	1	29	0.79
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	355	0.99