YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10175335, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.90
Transmembrane Helix	12	36	0.84
Cytoplasmic	37	63	0.86
Transmembrane Helix	64	88	0.78
Non-Cytoplasmic	89	94	0.69
Transmembrane Helix	95	118	0.84
Cytoplasmic	119	138	0.96
Transmembrane Helix	139	160	0.88
Non-Cytoplasmic	161	175	0.82
Transmembrane Helix	176	199	0.89
Cytoplasmic	200	207	0.85
Transmembrane Helix	208	227	0.95
Non-Cytoplasmic	228	237	0.71
Transmembrane Helix	238	259	0.85
Cytoplasmic	260	296	0.90
Transmembrane Helix	297	318	0.92
Non-Cytoplasmic	319	340	0.94
Transmembrane Helix	341	364	0.90
Cytoplasmic	365	378	0.94
Transmembrane Helix	379	400	0.91
Non-Cytoplasmic	401	406	0.83
Transmembrane Helix	407	429	0.92
Cytoplasmic	430	470	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLEKIIEHGN NFLWSYLLIA LLVGLGVFFT IRTKFAQITN IKEMFRLMKE SPSTSDGKKR  60
   61 VSSFGAFCIS AASRIGTGNL AGVAIAITLG GPGAIFWMWV VAIFGSVLSF IESTLAQVYK 120
  121 VKDKNGFKGG PAYYMEKALG QRWLGITFAI LITFCFGLTF NSVQANTISA AFEEAFGFNS 180
  181 AVIGVVLAVV VGFVIFGGVK RIAKVSQVVV PVMAGFYLLL AAYVVIFNIG EVPAVFQLIV 240
  241 SSAFGLEQAI GGGIGAAIMN GVKRGLFSNE AGMGSAPVAA ATADVSHPAK QGFIQTLGVF 300
  301 VDTLLICSAT AFIILLAGTP DEGLSGIQIT QAALSSHVGS WATYFVAFAI LLFCFSSIIG 360
  361 NYYYGESNLE YIKENKSVIF LFRLAVLGMV IYGSVESLAT VWDLADLFMA LMALVNLVAL 420
  421 ALIGKVALAV LKDYLKQKKE GKDPVFYSNN IEGLKHTECW EKEEVKRKNA