YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|10175177, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLYADVIWL LNLCIDYLLI ALTAILLKRP FQQFRFICAS FVASLIVVFM FTPVADFFLQ  60
   61 PIVKGLYSAL IVWIAFGYQR WRFFLQALFM FYFVTFMTGG GLFALHYFWQ TEIPFLTDHS 120
  121 LTSGSFGSGI SWLFVCLGFP LVWYFSKQRL ETIEVKKVQY ERLVDVEVWL EQSKLTIRGI 180
  181 IDSGNQLQDP FTKAPVMIIQ ADVLRGQIPD EWIEQMLNVE SIGTTDGDER FMRRMSVIPY 240
  241 RVVGQPQRLL AVFKPDSVRI RHEEEWMTVS KVLIGLNDKA LSPEDTYQCI VHPKMIVHGI 300
  301 TDKLA

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.90
Transmembrane Helix	7	27	0.91
Cytoplasmic	28	33	0.90
Transmembrane Helix	34	55	0.89
Non-Cytoplasmic	56	61	0.69
Transmembrane Helix	62	78	0.93
Cytoplasmic	79	87	0.73
Transmembrane Helix	88	109	0.93
Non-Cytoplasmic	110	124	0.87
Transmembrane Helix	125	145	0.91
Cytoplasmic	146	305	0.98